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rOpenSci - open tools for open science

rOpenSci - open tools for open science
Open Tools and R Packages for Open Science
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Published
Authors Maëlle Salmon, Noam Ross

Our onboarding process, thatensures that packages contributed by the community undergo atransparent, constructive, non adversarial and open review process,involves a lot of work from many actors: authors, reviewers and editors;but how much work ? Managing the effort involved in the peer-reviewprocess is a major part of ensuring its sustainability and quality.

Published

Our onboardingreviews,that ensure that packages contributed by the community undergo atransparent, constructive, non adversarial and open review process, takeplace in the issue tracker of a GitHub repository. Development of thepackages we onboard also takes place in the open, most often in GitHubrepositories.

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On March the 17th I had the honor to give a keynote talk about rOpenSci’s package onboarding system at the satRday conference in Cape Town, entitled “Our package reviews in review: introducing and analyzing rOpenSci onboarding system”. You can watch its recording, skim through the corresponding slides or… read this series!What is rOpenSci onboarding?

Published
Author Sasha Goodman

The Apache Tika parser is like the Babel fish in Douglas Adam’s book, “The Hitchhikers’ Guide to the Galaxy” 1 . The Babel fish translates any natural language to any other. Although Tika does not yet translate natural language, it starts to tame the tower of babel of digital document formats. As the Babel fish allowed a person to understand Vogon poetry, Tika allows an analyst to extract text and objects from Microsoft Word.

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Author Amanda Dobbyn

library(tidyverse)library(monkeylearn) This is a story (mostly) about how I started contributing to the rOpenSci package monkeylearn. I can’t promise any life flipturning upside down, but there will be a small discussion about git best practices which is almost as good 🤓. The tl;dr here is nothing novel but is something I wish I’d experienced firsthand sooner.

Published
Authors Karthik Ram, Noam Ross, Scott Chamberlain, Maëlle Salmon

rOpenSci’s package review system (akaonboarding) is one of our keyactivities to improve quality and sustainability of scientific Rpackages. Theeditorial team are constantly working towards improving the experiencefor both authors and reviewers. After our first year, we surveyedauthors andreviewers whoparticipated in our onboarding process to help us better understandwhat’s working well and where there is room for improvement.

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Author Konstantinos Vantas

That’s a lot alike Data Science, isn’t it? Hydrologic Processes evolve in space and time, are extremely complex and we may never comprehend them. For this reason Hydrologists use models where their inputs and outputs are measurable variables: climatic and hydrologic data, land uses, vegetation coverage, soil type etc.

Published
Author Daniel Münch

Olfactory Coding Detecting volatile chemicals and encoding these into neuronal activity is a vital task for all animals that is performed by their olfactory sensory systems. While these olfactory systems vary vastly between species regarding their numerical complexity, they are amazingly similar in their general structure.