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rOpenSci - open tools for open science

rOpenSci - open tools for open science
Open Tools and R Packages for Open Science
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Published
Authors Scott Chamberlain, Karthik Ram

UPDATE: Use the new discussion forum at https://discuss.ropensci.org/Community Community is at the heart of rOpenSci. We couldn’t have accomplished most of our work without help from various contributors and users. Most of our discussions with the broader community over the past year have been through twitter or one-on-one conversations. However, we would like to foster more open ended and deeper discussions with our community.

Published
Author Scott Chamberlain

We’re delighted to be sponsoring the upcoming Open Science Codefest in Santa Barbara, California, alongside RENCI, NCEAS, NSF, DataONE, and Mozilla Science Lab. The Open Science Codefest’s goal is to gather researchers from across ecology, biodiversity science, and other earth and environmental sciences with programmer types to collaborate on coding projects.

Published
Authors Rich FitzJohn, Matt Pennell, Amy Zanne, Will Cornwell

Science is reportedly in the middle of a reproducibility crisis. Reproducibility seems laudable and is frequently called for (e.g., nature and science). In general the argument is that research that can be independently reproduced is more reliable than research that cannot be independently reproduced.

Published
Author Karthik Ram

The rOpenSci project is a poster child for the fluid collaboration that has become increasingly common these days thanks to platforms like Twitter and GitHub. It has been really inspring to see open discussions take shape as rough ideas, which rapidly turn into prototype research software, all of which are now happening in the order of few days to weeks rather than months to years.

Published
Author Ted Hart

One of the goals of the rOpenSci is to facilitate interoperability between different data sources around web with our tools. We can achieve this by providing functionality within our packages that converts data coming down via web APIs in one format (often a provider specific schema) into a standard format. The new version of rWBclimate that we just posted to CRAN does just that.

Published
Author Matt Sundquist

Editor’s note: This is a guest post by Matt Sundquist from Plot.ly. Ggplotly and Plotly’s R API let you make ggplot2 plots, add py$ggplotly(), and make your plots interactive, online, and drawn with D3. Let’s make some.1. Getting Started and Examples Here is Fisher’s iris data.library("ggplot2")ggiris <- qplot(Petal.Width, Sepal.Length, data = iris, color = Species)print(ggiris) Let’s make it in Plotly.

Published
Author Carson Sievert

Editor’s note: This is the first in a series of posts from rOpenSci’s recent hackathon. I recently had the pleasure of participating in rOpenSci’s hackathon. To be honest, I was quite nervous to work among such notables, but I immediately felt welcome thanks to a warm and personable group. Alyssa Frazee has a great post summarizing the event, so check that out if you haven’t already.