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rOpenSci - open tools for open science

rOpenSci - open tools for open science
Open Tools and R Packages for Open Science
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Published
Authors Maëlle Salmon, Noam Ross, Scott Chamberlain, Karthik Ram

rOpenSci is pleased to announce a new collaboration with the Methods in Ecology and Evolution (MEE), a journal of the British Ecological Society, published by Wiley press 1 . Publications destined for MEE that include the development of a scientific R package will now have the option of a joint review process whereby the R package is reviewed by rOpenSci, followed by fast-tracked review of the manuscript by MEE.

Published
Author Tim Trice

What is rrricanes Why Write rrricanes? There is a tremendous amount of weather data available on the internet. Much of it is in raw format and not very easy to obtain. Hurricane data is no different. When one thinks of this data they may be inclined to think it is a bunch of map coordinates with some wind values and not much else. A deeper look will reveal structural and forecast data.

Published
Authors Scott Chamberlain, Maëlle Salmon, Noam Ross, Karthik Ram

The R package ecosystem now contains more than 10K packages, and several flagship packages belong under the rOpenSci suite. Some of these are: magick for image manipulation, plotly for interactive plots, and git2r for interacting with git. rOpenSci is a community of people making software to facilitate open and reproducible science/research.

Published
Author Verena Haunschmid

It all started January 26 th this year when I signed up to volunteer asa reviewer for R packages submitted to rOpenSci. My main motivation forwanting to volunteer was to learn something new and tocontribute to the R open source community. If you are wondering why thepeople behind rOpenSci are doing this, you can read How rOpenSci uses Code Review to Promote Reproducible Science.

Published
Author Jeroen Ooms

We have started working on a new rOpenSci package called writexl. This package wraps the very powerful libxlsxwriter library which allows for exporting data to Microsoft Excel format. The major benefit of writexl over other packages is that it is completely written in C and has absolutely zero dependencies. No Java, Perl or Rtools are required.Getting Started The write_xlsx function writes a data frame to an xlsx file.

Published
Author Jeroen Ooms

The new rOpenSci spelling package provides utilities for spell checking common document formats including latex, markdown, manual pages, and DESCRIPTION files. It also includes tools especially for package authors to automate spell checking of R documentation and vignettes.Spell Checking Packages The main purpose of this package is to quickly find spelling errors in R packages.

Published
Authors Noam Ross, Scott Chamberlain, Karthik Ram, Maëlle Salmon

At rOpenSci, we create and curate software to help scientists with the data life cycle. These tools access, download, manage, and archive scientific data in open, reproducible ways. Early on, we realized this could only be a community effort. The variety of scientific data and workflows could only be tackled by drawing on contributions of scientists with field-specific expertise. With the community approach came challenges.

Published

As you might remember from my blog post about ropenaq, I work as a data manager and statistician for an epidemiology project called CHAI for Cardio-vascular health effects of air pollution in Telangana, India. One of our interests in CHAI is determining exposure, and sources of exposure, to PM2.5 which are very small particles in the air that have diverse adverse health effects.

Published
Author Nicholas Tierney

This is a phrase that comes up when you first get a dataset. It is also ambiguous. Does it mean to do some exploratory modelling? Or make some histograms, scatterplots, and boxplots? Is it both? Starting down either path, you often encounter the non-trivial growing pains of working with a new dataset.