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rOpenSci - open tools for open science

rOpenSci - open tools for open science
Open Tools and R Packages for Open Science
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Published
Author Lukas Lundström

camsRad is a lightweight R client for the CAMS Radiation Service, that provides satellite-based time series of solar irradiation for the actual weather conditions as well as for clear-sky conditions. Satellite-based solar irradiation data have been around roughly as long our modern era satellites. But the price tag has been very high, in the range of several thousand euros per site.

Published
Author Jeroen Ooms

After 2.5 years of development, version 1.0 of the mongolite package has been released to CRAN. The package is now stable, well documented, and will soon be submitted for peer review to be onboarded in the rOpenSci suite.MongoDB in R and mongolite I started working on mongolite in September 2014, and it was first announced at the rOpenSci unconf 2015.

Published
Author Scott Chamberlain

I’ve recently released the new package ccafs, which provides accessto data from Climate Change, Agriculture and Food Security(CCAFS; http://ccafs-climate.org/) General Circulation Models (GCM) data.GCM’s are a particular type of climate model, used for weather forecasting,and climate change forecasting - read more athttps://en.wikipedia.org/wiki/General_circulation_model.

Published

Our Community Call on Tuesday, March 7th, 8-9 AM PST, will cover “How to ask questions so they get answered! Possibly by yourself!”. Asking questions about programming is a skill you can develop - we’re not just born with it. The speakers will cover some of the background and skills you’ll need to increase your chances of having your questions answered by your peers or by a busy expert.

Published
Author Sean Hughes

As a lab scientist, I do almost all of my experiments in microtiter plates. These tools are an efficient means of organizing many parallel experimental conditions. It’s not always easy, however, to translate between the physical plate and a useful data structure for analysis. My first attempts to solve this problem–nesting one ifelse call inside of the next to describe which well was which–were very unsatisfying.

Published

For a fourth year running, we are excited to announce the rOpenSci unconference, our annual event loosely modeled on Foo Camp. We’re organizing #runconf17 to bring together scientists, developers, and open data enthusiasts from academia, industry, government, and non-profits to get together for a couple of days to hack on various projects and generally enrich our community. The agenda is mostly decided during the unconference itself.

Published
Author Tom Webb

Programmatic access to biodiversity data is revolutionising large-scale, reproducible biodiversity research. In the marine realm, the largest global database of species occurrence records is the Ocean Biogeographic Information System, OBIS. As of January 2017, OBIS contains 47.78 million occurrences of 117,345 species, all openly available and accessible via the OBIS API.

Published
Author Jeroen Ooms

This week an update for xml2 and a new xslt package have appeared on CRAN. A full announcement for xml2 version 1.1 will appear on the rstudio blog. This post explains xml validation (via xsd schema) and xml transformation (via xslt stylesheets) which have been added in this release. XML schemas and stylesheets are not exactly new; both xslt 1.1 (2001) and xsd 1.0 (2004) have been available in browsers for over a decade.