If you have an R package on CRAN, you probably know about CRAN checks. Each package on CRAN, that is not archived on CRAN 1 , has a checks page, like this one for ropenaq:https://cloud.r-project.org/web/checks/check_results_ropenaq.html The table above is results of running R CMD CHECK on the package on a combination of different operating systems, R versions and compilers.
As announced in February, we now have an online book containing all things related to rOpenSci software review. Our goal is to update it approximately quarterly - it’s time to present the third version. You can read the changelog or this blog post to find out what’s new in our dev guide 0.3.0!Updates to our policies and guidance Scope We’ve introduced an important change for anyone thinking of submitting a package.
Image processing is one of the core focus areas of rOpenSci.
citecorp is a new (hit CRAN in late August) R package for working with data from theOpenCitations Corpus (OCC).OpenCitations, run by David Shotton and Silvio Peroni,houses the OCC, an open repository of scholarly citation dataunder the very open CC0 license.
The UCSC Xena platform provides an unprecedented resource for public omics data from big projects like The Cancer Genome Atlas (TCGA), however, it is hardfor users to incorporate multiple datasets or data types, integrate the selected data withpopular analysis tools or homebrewed code, and reproduce analysis procedures.
Teaching collaborative software development In the University of British Columbia’s Master of Data Science program one of the courses we teach is called Collaborative Software Development, DSCI 524. In this course we focus on teaching how to exploit practices from collaborative software development techniques in data scientific workflows.
The free online book Open Forensic Science in R was created to foster open science practices in the forensic science community.
rOpenSci HQ rOpenSci received a $678K award from the Sloan Foundation to expand Software Peer Review.We are hiring for a new position in statistical software testing and peer review.Join our next Community Call on Reproducible Workflows at Scale with drake September 24th.Videos, speakers’ slides, resources and collaborative notes from our Community Calls on Involving Multilingual Communities and Reproducible Research with R are posted.Software
Introduction The availability of large quantities of freely available data is revolutionizing the world of ecological research. Open data maximizes the opportunities to perform comparative analyses and meta-analyses. Such synthesis efforts will increasingly exploit “population data”, which we define here as time series of population abundance.
Ambitious workflows in R, such as machine learning analyses, can be difficult to manage. A single round of computation can take several hours to complete, and routine updates to the code and data tend to invalidate hard-earned results. You can enhance the maintainability, hygiene, speed, scale, and reproducibility of such projects with the drake R package.
