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iPhylo

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed.ISSN 2051-8188. Written content on this site is licensed under a Creative Commons Attribution 4.0 International license.
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For my own use more than anything else I've started creating a list of Wikidata SPARQL queries here. I personally don't find Wikidata's data model particularly easy to grasp, so one way to learn is to take the example queries on the Wikidata Query site and mess about with them. For those interested in taxonomic data Wikidata is quite rich in content.

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Last week I was at WikiCite 2017, a fascinating three day event in Vienna. Wikicite is "a proposal to build a bibliographic database in Wikidata to serve all Wikimedia projects", and is attracting increasing attention from academics, librarians, publishers, data geeks, and others. You can get a sense of the project by following @WikiCite on Twitter.

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Following on from previous posts The Semantic Web made fun: d3sparql and The Biodiversity Heritage Library meets Wikidata via Wikispecies: adding author identifiers to BioStor I've put together an example query that can be used to extract a taxonomic classification from Wikidata.

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David Schindel and colleagues recently published a paper in the Biodiversity Data Journal : The paper is a call for the community to help grow a database (GRBio) on biodiversity repositories, a database that will "will require community input and curation". Reading this, I'm struck by the lack of a clear sense of what that community might be. In particular: who is this database for, and who is most likely to build it? I suspect that

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Given that Wikipedia, Wikidata, and the Biodiversity Heritage Library (BHL) all share the goal of making information free, open, and accessible, there seems to be a lot of potential for useful collaboration. Below I sketch out some ideas. BHL as a source of references for Wikipedia Wikipedia likes to have sources cited to support claims in its articles. BHL has a lot of articles that could be cited by Wikipedia articles.

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Last week I attended the Wikipedia Science Conference (hashtag: #wikisci) at the Wellcome Trust in London. it was an interesting two days of talks and discussion. Below are a few random notes on topics that caught my eye. What is Wikidata? A recurring theme was the emergence of Wikidata, although it never really seemed clear what role Wikidata saw for itself.