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iPhylo

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed.
ISSN 2051-8188. Written content on this site is licensed under a Creative Commons Attribution 4.0 International license.
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Published

In the spirit of release early and release often, here is the first workable version of a biodiversity knowledge graph that I've been working on for Australian animals (for some background on knowledge graphs see Towards a biodiversity knowledge graph now in RIO). The core of this knowledge graph is a classification of animals from the Atlas of Living Australia (ALA) combined with data on taxonomic names and publications from the Australian

Published

Earlier this year I stopped over in Singapore, home of the spectacular "supertrees" in the Garden by the Bay. The trip was a holiday, but I spent a good part of one day visiting Rudolf Meier's group at the National University of Singapore. Chatting with Rudolf was great fun, he's opinionated and not afraid to share those opinions with anyone who will listen. Belatedly I've finally written up some of the topics we discussed.

Published

GBIF has reached 1 billion occurrences which is, of course, something to celebrate: An achievement on this scale represents a lot of work by many people over many years, years spent developing simple standards for sharing data, agreeing that sharing is a good thing in the first place, tools to enable sharing, and a place to aggregate all that shared data (GBIF). So, I asked a question: My point is not to do this: Rather it is to

Published

I've written a short paper entitled "Liberating links between datasets using lightweight data publishing: an example using plant names and the taxonomic literature" (phew) and put a preprint on bioRxiv (https://doi.org/10.1101/343996) while I figure out where to publish it. Here's the abstract: In some ways the paper is simply a record of me trying to figure out how to publish a project that I've been working on for several years, namely

Published

First off, let me say that what follows is a lot of arm waving to try and obscure how little I understand what I'm talking about. I'm going to sketch out what I think is a "radical" idea for a GBIF Challenge entry. The motivation for this idea comes from several sources: 1. GBIF is (under-)funded by direct contributions from governments, hence each year it essentially "begs" for money.