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iPhylo

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed.ISSN 2051-8188. Written content on this site is licensed under a Creative Commons Attribution 4.0 International license.
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Published

Notes to self on web map-style tree viewers. The basic idea is to use Google Maps or Leaflet to display a tree. Hence we need to compute tiles. One approach is to use a database that supports spatial queries to store the x,y coordinates of the tree. When we draw a tile we compute the coordinates of that tile, based on position and zoom level, do a spatial query to extract all lines that intersect with the rectangle for that tile, and draw those.

Published

BioStor now has 150,000 articles. When I wrote a paper describing how BioStor worked it had 26,784 articles, so things have progressed somewhat! I continue to tweak the interface to BioStor, trying different ways to explore the articles. Spatial search I've tweaked spatial search in BioStor.